miRNA
TissueAtlas
2025

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ncRNA Patterns
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miRNA Correlations
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miEAA Analysis
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Data Protection

Websites of interest
with complementary function:

> miRNA TissueAtlas
> miRCarta
> mESAdb
> miRmIne
> SEAweb
> MirGeneDB
> The RNA Atlas

© 2024 Chair for Clinical Bioinformatics

Downloads

miRNATissueAtlas2 (2021) files

miRNATissueAtlas2 files are available as .csv files.

V2 snc expression

V2 human isomir expression

V2 mouse isomir expression

Updated miRNATissueAtlas 2025 Meta_data Matrices

miRNATissueAtlas 2025 files are availabel as parquet files

V3 meta_data human

V3 meta_data mouse

Updated miRNATissueAtlas 2025 Expression Matrices

miRNATissueAtlas 2025 files are currently available as h5ad files.
Users limited by RAM should load the file in backed mode using anndata.

miRNA expression human

miRNA expression mouse

isomiR expression human

isomiR expression mouse

sncRNA expression human

sncRNA expression mouse

snoRNA expression human

snoRNA expression mouse

scaRNA expression human

scaRNA expression mouse

lincRNA expression human

lincRNA expression mouse

piRNA expression human

piRNA expression mouse

rRNA expression human

rRNA expression mouse

tRNA expression human

tRNA expression mouse

miscRNA expression human

miscRNA expression mouse

Updated miRNATissueAtlas 2025 Tissue Average and Standard Deviation Matrices

miRNATissueAtlas 2025 files are currently available as parquet files.

miRNA avg std human

miRNA avg std mouse

isomiR avg std human

isomiR avg std mouse

sncRNA avg std human

sncRNA avg std mouse

snoRNA avg std human

snoRNA avg std mouse

scaRNA avg std human

scaRNA avg std mouse

lincRNA avg std human

lincRNA avg std mouse

piRNA avg std human

piRNA avg std mouse

rRNA avg std human

rRNA avg std mouse

tRNA avg std human

tRNA avg std mouse

miscRNA avg std human

miscRNA avg std mouse